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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
85
single cell RNA-seq
48
snATAC-seq
47
WGBS
10
Hi-C
10
RRBS
4
ChIP-seq
2
DNase-seq
1
DNAme array
Assay category
180
Transcription
166
DNA accessibility
58
DNA methylation
10
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
45
February, 2021
13
July, 2019
7
August, 2020
6
May, 2021
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
bam
409
fastq
398
bigWig
181
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
1
tar
Organism
418
Homo sapiens
Biosample type
796
tissue
418
primary cell
75
cell line
56
in vitro differentiated cells
7
stem cell
Organ
164
epithelium
152
pancreas
5
kidney
5
vasculature
4
blood vessel
4
brain
2
connective tissue
2
liver
2
vein
1
eye
1
heart
1
musculature of body
Project
324
HPAP
93
AMP
1
ITG
Genome assembly (visualization)
19
hg19
11
GRCh38
Lab
324
Klaus Kaestner, Upenn
93
AMP-T2D consortium
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
8
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bam
csv
BIOSAMPLE
ASSAY
418 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
ChIP-seq
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
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