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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
75
single cell RNA-seq
41
WGBS
21
snATAC-seq
10
Hi-C
10
RRBS
4
ChIP-seq
2
DNase-seq
1
DNAme array
Assay category
170
Transcription
139
DNA accessibility
52
DNA methylation
10
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
February, 2021
13
July, 2019
7
August, 2020
6
May, 2021
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
bam
396
bigWig
364
fastq
180
bed narrowPeak
167
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
34
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
375
Homo sapiens
Biosample type
749
tissue
375
primary cell
74
cell line
52
in vitro differentiated cells
7
stem cell
Organ
158
epithelium
146
pancreas
5
kidney
5
vasculature
4
blood vessel
4
brain
2
connective tissue
2
liver
2
vein
1
eye
1
heart
1
musculature of body
Project
279
HPAP
95
AMP
1
ITG
Genome assembly (visualization)
19
hg19
11
GRCh38
Lab
279
Klaus Kaestner, Upenn
95
AMP-T2D consortium
Kyle Gaulton, UCSD
1
ITG
Audit category:
8
inconsistent ontology term
4
audit script error
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bam
month_released!
February, 2021
BIOSAMPLE
ASSAY
375 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
Hi-C
RRBS
ChIP-seq
DNase-seq
DNAme array
primary cell
pancreatic alpha cell
29
42
25
1
Langerhans cell
73
21
pancreatic beta cell
16
11
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
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