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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
87
single cell RNA-seq
61
ATAC-seq
48
snATAC-seq
47
WGBS
10
Hi-C
10
RRBS
4
ChIP-seq
2
DNase-seq
1
DNAme array
Assay category
180
Transcription
111
DNA accessibility
58
DNA methylation
10
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
134
May, 2022
88
February, 2023
59
September, 2020
May, 2020
45
February, 2021
13
July, 2019
7
August, 2020
6
May, 2021
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
409
fastq
bam
353
bigWig
181
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
363
Homo sapiens
Biosample type
802
tissue
363
primary cell
74
cell line
56
in vitro differentiated cells
7
stem cell
Organ
164
epithelium
152
pancreas
5
kidney
5
vasculature
4
blood vessel
4
brain
2
connective tissue
2
liver
2
vein
1
eye
1
heart
1
musculature of body
Project
324
HPAP
38
AMP
1
ITG
Genome assembly (visualization)
19
hg19
11
GRCh38
Lab
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
38
AMP-T2D consortium
1
ITG
Audit category:
31
audit script error
8
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bam
month_released!
May, 2020
BIOSAMPLE
ASSAY
363 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
RRBS
ChIP-seq
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
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