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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
48
snATAC-seq
47
WGBS
32
ChIP-seq
10
RRBS
6
Hi-C
2
DNase-seq
1
DNAme array
1
pCHi-C
Assay category
Transcription
172
DNA accessibility
58
DNA methylation
32
DNA binding
6
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
101
May, 2022
55
May, 2020
34
February, 2021
18
May, 2021
13
August, 2017
12
February, 2023
11
October, 2019
9
July, 2019
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2020
Available data
273
bam
bigWig
181
bed narrowPeak
161
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
269
Homo sapiens
Biosample type
655
tissue
269
primary cell
124
cell line
87
in vitro differentiated cells
5
stem cell
Organ
122
epithelium
101
pancreas
8
kidney
8
vasculature
7
blood vessel
7
vein
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
brain
Project
137
HPAP
131
AMP
1
ITG
Genome assembly (visualization)
32
hg19
17
GRCh38
Lab
137
Klaus Kaestner, Upenn
131
AMP-T2D consortium
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
15
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bigWig
assay_slims!
Transcription
BIOSAMPLE
ASSAY
269 results
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ATAC-seq
snATAC-seq
WGBS
ChIP-seq
RRBS
Hi-C
DNase-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
22
31
6
1
Langerhans cell
48
pancreatic beta cell
13
16
6
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
CD4-positive, alpha-beta memory T cell
22
+ See 27 more…
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