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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ATAC-seq
48
snATAC-seq
31
DNase-seq
1
FAIRE-seq
Assay category
268
DNA accessibility
182
Transcription
162
DNA binding
52
DNA methylation
10
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
28
February, 2021
24
June, 2019
14
September, 2018
13
May, 2021
7
August, 2020
7
October, 2019
5
August, 2017
5
September, 2017
3
September, 2020
2
November, 2020
Available data
114
bam
108
bigWig
69
bed narrowPeak
60
fastq
60
zippedFastqFolder
52
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
27
bed bed3+
tsv
1
bed bed3
1
tar
Organism
268
Homo sapiens
Biosample type
430
tissue
268
primary cell
38
in vitro differentiated cells
30
cell line
Organ
91
epithelium
71
pancreas
12
kidney
8
connective tissue
7
vasculature
5
blood vessel
5
brain
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
171
AMP
97
HPAP
Genome assembly (visualization)
107
hg19
76
GRCh38
Lab
171
AMP-T2D consortium
97
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
Audit category:
27
audit script error
9
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
files.file_type!
tsv
BIOSAMPLE
ASSAY
268 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
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