Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
161
ATAC-seq
149
total RNA-seq
135
single cell RNA-seq
31
DNase-seq
27
snATAC-seq
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
286
Transcription
220
DNA accessibility
162
DNA binding
17
DNA methylation
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
40
September, 2020
33
October, 2019
27
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
429
bam
409
fastq
394
bigWig
181
bed narrowPeak
174
tsv
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
686
Homo sapiens
Biosample type
2709
tissue
686
primary cell
653
cell line
343
in vitro differentiated cells
10
stem cell
Organ
319
epithelium
263
pancreas
37
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
518
AMP
168
HPAP
Genome assembly (visualization)
404
hg19
355
GRCh38
Lab
518
AMP-T2D consortium
Kyle Gaulton, UCSD
168
Klaus Kaestner, Upenn
Audit category:
49
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
files.file_type!
zippedFastqFolder
assay_title!
Hi-C
BIOSAMPLE
ASSAY
686 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
snATAC-seq
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
13
13
52
12
6
Langerhans cell
33
27
pancreatic beta cell
13
10
21
12
exocrine cell
39
pancreatic ductal cell
13
4
4
10
+ See 84 more…
See all biosamples
Download