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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
total RNA-seq
139
ATAC-seq
135
single cell RNA-seq
105
ChIP-seq
27
snATAC-seq
Hi-C
10
RRBS
6
WGBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
286
Transcription
168
DNA accessibility
105
DNA binding
17
DNA methylation
Target of assay
76
histone
76
histone modification
39
narrow histone mark
37
broad histone mark
32
control
Date released
102
May, 2020
88
February, 2023
59
September, 2018
48
February, 2021
48
July, 2018
43
April, 2018
40
August, 2017
40
September, 2020
27
July, 2019
20
May, 2021
20
October, 2019
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
May, 2019
1
November, 2018
Available data
429
bam
409
fastq
394
bigWig
181
bed narrowPeak
174
tsv
zippedFastqFolder
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
577
Homo sapiens
Biosample type
2148
tissue
577
primary cell
326
in vitro differentiated cells
298
cell line
10
stem cell
Organ
258
epithelium
241
pancreas
22
connective tissue
20
kidney
12
vasculature
11
liver
10
blood vessel
7
brain
7
heart
7
vein
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
409
AMP
168
HPAP
Genome assembly (visualization)
302
hg19
250
GRCh38
Lab
409
AMP-T2D consortium
Kyle Gaulton, UCSD
168
Klaus Kaestner, Upenn
Audit category:
27
audit script error
26
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
files.file_type!
zippedFastqFolder
bigBed narrowPeak
assay_title!
Hi-C
BIOSAMPLE
ASSAY
577 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
RRBS
WGBS
DNase-seq
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
52
7
12
13
6
Langerhans cell
33
27
pancreatic beta cell
21
3
12
13
exocrine cell
39
pancreatic ductal cell
4
10
13
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