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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
161
ATAC-seq
149
total RNA-seq
135
single cell RNA-seq
31
DNase-seq
27
snATAC-seq
10
RRBS
9
Hi-C
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
286
Transcription
220
DNA accessibility
162
DNA binding
17
DNA methylation
9
3D chromatin structure
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
40
September, 2020
34
October, 2019
31
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
November, 2018
Available data
429
bam
409
fastq
398
bigWig
181
bed narrowPeak
174
tsv
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
695
Homo sapiens
Biosample type
2685
tissue
695
primary cell
657
cell line
347
in vitro differentiated cells
10
stem cell
Organ
326
epithelium
266
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
524
AMP
171
HPAP
ITG
Genome assembly (visualization)
413
hg19
355
GRCh38
Lab
524
AMP-T2D consortium
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
files.file_type!
zippedFastqFolder
award.project!
ITG
BIOSAMPLE
ASSAY
695 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
snATAC-seq
RRBS
Hi-C
WGBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
13
13
52
12
1
6
Langerhans cell
33
27
pancreatic beta cell
13
10
21
12
1
exocrine cell
39
pancreatic ductal cell
13
4
4
10
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