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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
160
ATAC-seq
145
total RNA-seq
135
single cell RNA-seq
30
DNase-seq
27
snATAC-seq
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
282
Transcription
218
DNA accessibility
162
DNA binding
17
DNA methylation
10
3D chromatin structure
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
40
September, 2020
34
October, 2019
31
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
423
bam
409
fastq
393
bigWig
179
bed narrowPeak
170
tsv
zippedFastqFolder
108
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
34
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
690
Homo sapiens
Biosample type
2681
tissue
690
primary cell
651
cell line
347
in vitro differentiated cells
10
stem cell
Organ
326
epithelium
266
pancreas
37
vasculature
36
kidney
32
connective tissue
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
518
AMP
171
HPAP
1
ITG
Genome assembly (visualization)
407
hg19
350
GRCh38
Lab
518
AMP-T2D consortium
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
files.file_type!
zippedFastqFolder
month_released!
November, 2020
BIOSAMPLE
ASSAY
690 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
snATAC-seq
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
13
13
52
12
1
6
Langerhans cell
33
27
pancreatic beta cell
13
10
21
12
1
exocrine cell
39
pancreatic ductal cell
13
4
4
10
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