Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
100
single cell RNA-seq
84
ATAC-seq
54
total RNA-seq
28
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
156
Transcription
155
DNA binding
113
DNA accessibility
Target of assay
118
histone
118
histone modification
62
narrow histone mark
56
broad histone mark
31
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
72
September, 2018
58
August, 2017
51
June, 2019
48
July, 2018
45
May, 2020
43
April, 2018
31
October, 2019
18
July, 2019
14
May, 2021
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
425
bam
409
fastq
395
bigWig
178
bed narrowPeak
174
tsv
153
zippedFastqFolder
106
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
34
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
425
Homo sapiens
Biosample type
1880
tissue
582
cell line
425
primary cell
291
in vitro differentiated cells
3
stem cell
Organ
242
epithelium
194
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
eye
2
adipose tissue
2
artery
1
pericardium
Project
425
AMP
Genome assembly (visualization)
391
hg19
342
GRCh38
Lab
425
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
41
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
organ_slims!
eye
BIOSAMPLE
ASSAY
425 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
12
7
10
pancreatic alpha cell
13
12
6
10
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
5
4
pancreatic endocrine cell
23
+ See 73 more…
See all biosamples
Download