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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ATAC-seq
175
single cell RNA-seq
148
total RNA-seq
41
WGBS
31
DNase-seq
21
snATAC-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
325
Transcription
252
DNA accessibility
DNA binding
52
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
134
May, 2022
102
May, 2020
88
February, 2023
59
September, 2020
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
16
May, 2021
10
October, 2019
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
270
fastq
268
bam
266
bigWig
167
tsv
153
zippedFastqFolder
68
bed narrowPeak
52
bigBed narrowPeak
31
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
639
Homo sapiens
Biosample type
1273
tissue
639
primary cell
160
in vitro differentiated cells
85
cell line
7
stem cell
Organ
308
epithelium
270
pancreas
23
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
359
AMP
279
HPAP
1
ITG
Genome assembly (visualization)
280
hg19
231
GRCh38
Lab
359
AMP-T2D consortium
279
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
24
inconsistent ontology term
4
audit script error
lab.title!
Kyle Gaulton, UCSD
month_released!
February, 2021
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
639 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
snATAC-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
35
12
52
25
1
Langerhans cell
73
21
pancreatic beta cell
23
12
21
16
1
exocrine cell
39
pancreatic acinar cell
9
12
4
1
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