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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
157
ChIP-seq
145
total RNA-seq
48
snATAC-seq
47
WGBS
28
DNase-seq
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
334
Transcription
277
DNA accessibility
157
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
121
histone
121
histone modification
63
narrow histone mark
58
broad histone mark
30
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
47
June, 2019
43
April, 2018
34
October, 2019
26
July, 2019
20
May, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
417
bam
409
fastq
388
bigWig
175
bed narrowPeak
170
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
32
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
836
Homo sapiens
Biosample type
2412
tissue
836
primary cell
591
cell line
346
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
511
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
403
hg19
346
GRCh38
Lab
511
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
organ_slims!
heart
BIOSAMPLE
ASSAY
836 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
13
52
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
13
21
16
1
exocrine cell
39
pancreatic acinar cell
9
12
8
4
1
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