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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
142
ChIP-seq
48
snATAC-seq
47
WGBS
27
DNase-seq
10
RRBS
6
Hi-C
1
DNAme array
1
pCHi-C
Assay category
Transcription
275
DNA accessibility
142
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
107
histone
107
histone modification
58
narrow histone mark
49
broad histone mark
26
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
101
May, 2022
100
May, 2020
59
August, 2017
53
June, 2019
46
September, 2018
35
February, 2021
18
May, 2021
12
February, 2023
11
July, 2019
11
October, 2019
7
August, 2020
6
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2023
Available data
248
bam
220
bigWig
164
bed narrowPeak
158
fastq
101
zippedFastqFolder
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
29
bed bed3+
18
tsv
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
hdf5
1
bed bed3
Organism
482
Homo sapiens
Biosample type
1390
tissue
528
cell line
482
primary cell
214
in vitro differentiated cells
8
stem cell
Organ
243
epithelium
191
pancreas
35
vasculature
30
kidney
blood vessel
23
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
5
eye
Project
334
AMP
147
HPAP
1
ITG
Genome assembly (visualization)
234
hg19
184
GRCh38
Lab
334
AMP-T2D consortium
147
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
organ_slims!
blood vessel
assay_slims!
Transcription
BIOSAMPLE
ASSAY
482 results
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ATAC-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
35
13
31
1
pancreatic beta cell
23
13
16
1
Langerhans cell
48
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
pancreatic endocrine cell
23
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