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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
32
ATAC-seq
27
snATAC-seq
21
ChIP-seq
6
WGBS
1
DNase-seq
1
RRBS
Assay category
248
Transcription
60
DNA accessibility
21
DNA binding
7
DNA methylation
Target of assay
73
histone
histone modification
40
narrow histone mark
33
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
48
July, 2018
45
February, 2021
41
September, 2018
41
September, 2020
38
April, 2018
20
August, 2017
7
August, 2020
6
November, 2017
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
336
fastq
310
bam
282
bigWig
174
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
336
Homo sapiens
Biosample type
411
cell line
336
primary cell
279
tissue
76
in vitro differentiated cells
2
stem cell
Organ
201
epithelium
200
pancreas
6
brain
4
vasculature
3
connective tissue
2
blood vessel
Project
169
HPAP
167
AMP
Genome assembly (visualization)
156
GRCh38
153
hg19
Lab
169
Klaus Kaestner, Upenn
167
AMP-T2D consortium
Audit category:
27
audit script error
7
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
336 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
DNase-seq
RRBS
primary cell
pancreatic alpha cell
12
52
13
6
6
Langerhans cell
34
27
pancreatic beta cell
12
21
10
6
exocrine cell
39
pancreatic acinar cell
9
4
5
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