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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
340
ATAC-seq
263
single cell RNA-seq
232
total RNA-seq
183
ChIP-seq
87
RNA microarray
66
snATAC-seq
57
WGBS
39
pCHi-C
34
Hi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
DNase-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
183
DNA binding
Target of assay
147
histone
147
histone modification
74
narrow histone mark
73
broad histone mark
24
control
12
transcription factor
1
RNA binding protein
Date released
115
August, 2017
23
October, 2019
19
August, 2021
14
November, 2017
7
October, 2017
4
May, 2021
1
April, 2019
Available data
bam
1233
bigWig
1171
bed narrowPeak
857
fastq
801
bigBed narrowPeak
314
tagAlign
114
bed broadPeak
79
bigBed broadPeak
53
bed bed3+
3
tar
1
tagAlign bed3+
Organism
183
Homo sapiens
Biosample type
145
tissue
19
cell line
15
in vitro differentiated cells
4
primary cell
Organ
51
connective tissue
42
liver
36
adipose tissue
22
brain
22
musculature of body
20
pancreas
4
gonad
4
ovary
2
eye
1
heart
1
limb
1
lymph node
Project
183
AMP
Genome assembly (visualization)
38
hg19
2
GRCh38
Lab
165
AMP-T2D consortium
Kyle Gaulton, UCSD
18
Bing Ren, UCSD
Audit category:
1
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bam
BIOSAMPLE
ASSAY
183 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
41
subcutaneous abdominal adipose tissue
36
liver
23
skeletal muscle tissue
22
brain
7
+ See 8 more…
cell line
HepG2
19
in vitro differentiated cells
adipocyte
14
neural progenitor cell
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
2
monocyte
1
neutrophil
1
See all biosamples
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