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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1152
total RNA-seq
792
ChIP-seq
286
ATAC-seq
176
single cell RNA-seq
170
DNase-seq
87
RNA microarray
38
pCHi-C
23
Hi-C
18
snATAC-seq
17
WGBS
16
small RNA-seq
10
MeRIP-seq
8
RRBS
5
STARR-seq
4
Capture-C
3
snDrop-seq
2
FAIRE-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
170
DNA accessibility
Date released
163
June, 2019
6
October, 2019
1
August, 2017
Available data
180
bam
180
bed narrowPeak
180
bigBed narrowPeak
180
bigWig
178
bed broadPeak
178
bigBed broadPeak
177
bed bed3+
fastq
Organism
170
Homo sapiens
Biosample type
168
tissue
primary cell
2
cell line
Organ
69
kidney
36
limb
32
musculature of body
27
heart
25
brain
18
ureter
5
blood vessel
5
pancreas
5
vasculature
4
artery
3
eye
2
nerve
1
adipose tissue
1
connective tissue
1
epithelium
1
liver
Project
170
AMP
Genome assembly (visualization)
169
GRCh38
153
hg19
Lab
170
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
files.file_type!
fastq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
170 results
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DNase-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 37 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
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