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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1181
total RNA-seq
860
ChIP-seq
454
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
39
pCHi-C
39
snATAC-seq
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
FAIRE-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
3
DNA accessibility
Date released
17
July, 2019
2
August, 2017
1
October, 2019
Available data
19
bed bedMethyl
19
bigBed bedMethyl
fastq
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
1
tar
Organism
20
Homo sapiens
Biosample type
10
primary cell
10
tissue
Organ
7
epithelium
5
kidney
3
brain
3
musculature of body
2
heart
2
pancreas
2
vasculature
1
blood vessel
1
connective tissue
1
eye
1
liver
1
pericardium
1
vein
Project
20
AMP
Genome assembly (visualization)
18
hg19
Lab
20
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
files.file_type!
fastq
BIOSAMPLE
ASSAY
20 results
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RRBS
FAIRE-seq
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
+ See 5 more…
tissue
kidney
1
1
skeletal muscle tissue
2
brain
1
frontal cortex
1
heart left ventricle
1
+ See 3 more…
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