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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1109
total RNA-seq
726
ChIP-seq
407
ATAC-seq
170
DNase-seq
142
single cell RNA-seq
87
RNA microarray
50
WGBS
39
snATAC-seq
36
pCHi-C
30
Hi-C
17
small RNA-seq
15
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
FAIRE-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
142
Transcription
Target of assay
3
control
Date released
47
September, 2023
34
May, 2022
18
September, 2020
14
August, 2021
9
April, 2020
6
February, 2021
5
April, 2018
3
December, 2019
3
July, 2019
3
May, 2023
Available data
fastq
113
tsv
100
bam
100
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
142
Homo sapiens
Biosample type
81
tissue
59
primary cell
2
in vitro differentiated cells
Organ
heart
64
kidney
9
lung
6
blood vessel
6
vasculature
5
pancreas
4
epithelium
3
brain
2
artery
1
connective tissue
1
liver
1
musculature of body
Project
51
HPAP
47
KPMP
35
AMP
9
LungMap
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
51
Klaus Kaestner, Upenn
47
KPMP
24
AMP-T2D consortium
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
files.file_type!
fastq
organ_slims!
heart
BIOSAMPLE
ASSAY
142 results
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single cell RNA-seq
tissue
kidney
64
lung
9
aorta
4
pulmonary artery
2
liver
1
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primary cell
Langerhans cell
51
pancreatic acinar cell
3
cerebellar granule cell
2
Purkinje cell
1
pancreatic ductal cell
1
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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