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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ATAC-seq
68
ChIP-seq
59
single cell RNA-seq
41
WGBS
30
DNase-seq
29
total RNA-seq
21
snATAC-seq
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
220
DNA accessibility
90
Transcription
68
DNA binding
51
DNA methylation
10
3D chromatin structure
Target of assay
50
histone
50
histone modification
25
broad histone mark
25
narrow histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
134
May, 2022
102
May, 2020
55
June, 2019
34
October, 2019
31
July, 2019
20
May, 2021
18
September, 2020
12
February, 2023
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
429
bam
fastq
398
bigWig
181
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
440
Homo sapiens
Biosample type
2372
tissue
440
primary cell
230
cell line
206
in vitro differentiated cells
6
stem cell
Organ
168
epithelium
88
pancreas
36
kidney
35
connective tissue
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
284
AMP
155
HPAP
1
ITG
Genome assembly (visualization)
187
hg19
127
GRCh38
Lab
284
AMP-T2D consortium
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
42
inconsistent ontology term
4
audit script error
lab.title!
Kyle Gaulton, UCSD
files.file_type!
fastq
BIOSAMPLE
ASSAY
440 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
total RNA-seq
snATAC-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
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