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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
454
ATAC-seq
200
DNase-seq
39
snATAC-seq
3
FAIRE-seq
Assay category
1438
Transcription
860
DNA binding
696
DNA accessibility
76
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
100
May, 2020
92
February, 2023
82
August, 2021
81
May, 2022
33
October, 2019
29
May, 2021
26
November, 2019
22
February, 2021
11
May, 2023
10
April, 2020
8
July, 2019
4
March, 2020
3
January, 2018
3
March, 2019
2
August, 2017
2
November, 2020
1
August, 2022
Available data
474
bed narrowPeak
371
bam
345
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
695
Homo sapiens
Biosample type
408
tissue
220
primary cell
37
in vitro differentiated cells
31
cell line
Organ
163
kidney
91
epithelium
91
pancreas
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
35
musculature of body
34
brain
32
eye
30
connective tissue
25
liver
18
ureter
12
bone element
12
skeleton
10
lung
5
adipose tissue
3
nerve
3
vein
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
626
AMP
60
HPAP
10
LungMap
Genome assembly (visualization)
388
GRCh38
385
hg19
Lab
517
AMP-T2D consortium
81
Katalin Susztak, Upenn
60
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
46
inconsistent ontology term
2
audit script error
1
inconsistent replicate
lab.title!
Kyle Gaulton, UCSD
files.file_type!
fastq
ibed
BIOSAMPLE
ASSAY
696 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
coronary artery
36
2
islet of Langerhans
37
1
liver
20
heart
18
+ See 58 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
Langerhans cell
21
monocyte
15
+ See 56 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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