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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
41
WGBS
39
ATAC-seq
31
snATAC-seq
4
ChIP-seq
4
Hi-C
4
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
115
Transcription
70
DNA accessibility
41
DNA methylation
4
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
134
May, 2022
47
September, 2023
19
April, 2020
18
September, 2020
7
March, 2020
5
March, 2023
3
October, 2022
1
May, 2021
Available data
fastq
153
zippedFastqFolder
16
bigWig
8
tsv
6
bam
4
bed narrowPeak
4
hic
3
bedpe bed3+
3
cool
Organism
229
Homo sapiens
Biosample type
156
primary cell
70
tissue
6
cell line
2
stem cell
Organ
91
pancreas
87
epithelium
47
kidney
19
lung
Project
AMP
155
HPAP
47
KPMP
19
LungMap
8
T1D
4
community
1
ITG
Genome assembly (visualization)
9
hg19
7
GRCh38
Lab
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
4
inconsistent ontology term
3
audit script error
lab.title!
Kyle Gaulton, UCSD
files.file_type!
fastq
organ_slims!
ureter
award.project!
AMP
BIOSAMPLE
ASSAY
234 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
ChIP-seq
Hi-C
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
51
21
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
chondrocytes
1
tissue
kidney
47
lung
9
10
islet of Langerhans
2
2
cell line
EndoC_BH1
2
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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