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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
28
DNA binding
Target of assay
653
histone
653
histone modification
344
narrow histone mark
broad histone mark
167
control
48
transcription factor
RNA binding protein
7
recombinant protein
5
nucleotide modification
Date released
10
August, 2021
7
October, 2019
5
February, 2021
4
May, 2021
2
April, 2019
Available data
395
bigWig
387
bam
fastq
369
bed narrowPeak
317
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
17
bed bed3+
9
tagAlign
2
tar
Organism
28
Homo sapiens
Biosample type
22
cell line
4
in vitro differentiated cells
2
tissue
Organ
10
liver
7
kidney
6
heart
4
artery
4
blood vessel
4
vasculature
1
epithelium
1
pancreas
Project
28
AMP
Genome assembly (visualization)
28
hg19
18
GRCh38
Lab
18
AMP-T2D consortium
10
Bing Ren, UCSD
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
files.file_type!
fastq
target.investigated_as!
broad histone mark
RNA binding protein
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
cell line
HepG2
10
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
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in vitro differentiated cells
cardiomyocytes
3
pancreatic PP cell
1
tissue
heart left ventricle
2
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