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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
total RNA-seq
37
ATAC-seq
37
ChIP-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
118
Transcription
37
DNA accessibility
37
DNA binding
4
3D chromatin structure
Target of assay
27
histone
27
histone modification
15
broad histone mark
12
narrow histone mark
10
control
transcription factor
Date released
81
May, 2021
42
August, 2021
26
February, 2021
16
February, 2023
14
August, 2017
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
Available data
254
bam
217
bigWig
131
tsv
fastq
100
bed narrowPeak
36
tagAlign
19
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
202
Homo sapiens
Biosample type
2357
tissue
435
primary cell
206
cell line
202
in vitro differentiated cells
6
stem cell
Organ
42
connective tissue
4
epithelium
2
embryo
2
pancreas
1
heart
Project
202
AMP
Genome assembly (visualization)
170
hg19
143
GRCh38
Lab
195
AMP-T2D consortium
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
lab.title!
Kyle Gaulton, UCSD
files.file_type!
fastq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
202 results
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total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
neural progenitor cell
7
10
21
adipocyte
5
8
14
1
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
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