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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
37
ATAC-seq
4
GRO-seq
4
Hi-C
4
total RNA-seq
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
161
DNA binding
38
DNA accessibility
4
3D chromatin structure
4
Transcription
Target of assay
92
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
37
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
43
December, 2017
35
August, 2021
24
February, 2018
16
February, 2023
6
May, 2021
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
4
March, 2020
1
August, 2018
Available data
291
bam
254
bigWig
141
fastq
132
bed narrowPeak
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
216
Homo sapiens
Biosample type
1507
tissue
675
primary cell
538
cell line
216
in vitro differentiated cells
6
stem cell
Organ
92
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
216
AMP
Genome assembly (visualization)
165
hg19
138
GRCh38
4
hg18
Lab
209
AMP-T2D consortium
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
25
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
Katalin Susztak, Upenn
files.file_type!
tsv
BIOSAMPLE
ASSAY
216 results
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ChIP-seq
ATAC-seq
GRO-seq
Hi-C
total RNA-seq
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
67
8
1
1
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
definitive endodermal cell
8
1
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