Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
5
single cell RNA-seq
4
total RNA-seq
1
MPRA
1
snATAC-seq
Assay category
9
Transcription
1
DNA accessibility
Date released
89
February, 2021
4
February, 2023
1
May, 2022
1
October, 2022
Available data
3188
bam
bigWig
1621
bed narrowPeak
1504
tsv
1334
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
98
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
94
Homo sapiens
Biosample type
94
tissue
1
cell line
Organ
88
bone element
5
kidney
4
skeleton
1
musculature of body
Project
95
AMP
Genome assembly (visualization)
1
hg19
Lab
95
AMP-T2D consortium
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
lab.title!
Kyle Gaulton, UCSD
Katalin Susztak, Upenn
files.file_type!
bigWig
BIOSAMPLE
ASSAY
95 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
single cell RNA-seq
total RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
5
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
cell line
MIN6
1
See all biosamples
Download