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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
18
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
37
DNA accessibility
25
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
20
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
244
bam
223
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
288
Homo sapiens
Biosample type
266
tissue
22
primary cell
Organ
895
pancreas
791
liver
683
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
288
AMP
Genome assembly (visualization)
218
GRCh38
166
hg19
Lab
288
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
288 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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