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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
936
total RNA-seq
691
ChIP-seq
229
ATAC-seq
176
DNase-seq
174
single cell RNA-seq
87
RNA microarray
24
pCHi-C
18
WGBS
18
snATAC-seq
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1126
Transcription
691
DNA binding
426
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
469
histone
469
histone modification
259
narrow histone mark
210
broad histone mark
158
control
66
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
47
September, 2023
42
May, 2022
40
March, 2020
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1713
bam
1554
bigWig
987
tsv
860
bed narrowPeak
539
bigBed narrowPeak
187
bed broadPeak
179
bed bed3+
179
tagAlign
178
fastq
176
bigBed broadPeak
151
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2399
Homo sapiens
Biosample type
2401
tissue
790
primary cell
657
cell line
279
in vitro differentiated cells
10
stem cell
Organ
490
connective tissue
431
adipose tissue
307
liver
307
pancreas
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2331
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1661
GRCh38
1557
hg19
Lab
2141
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
month_released!
August, 2017
BIOSAMPLE
ASSAY
2401 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
liver
167
97
20
2
1
1
1
1
islet of Langerhans
198
29
39
4
1
3
1
4
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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