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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
92
total RNA-seq
58
snATAC-seq
49
ATAC-seq
47
WGBS
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
ChIP-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
237
Transcription
107
DNA accessibility
47
DNA methylation
4
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
134
May, 2022
76
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
7
August, 2020
March, 2020
5
March, 2023
3
October, 2022
1
May, 2021
Available data
169
fastq
153
zippedFastqFolder
11
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
1
bam
1
bed narrowPeak
Organism
391
Homo sapiens
Biosample type
325
primary cell
66
tissue
3
cell line
2
stem cell
Organ
153
epithelium
153
pancreas
47
kidney
19
lung
Project
AMP
324
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
1
T1D
Genome assembly (visualization)
12
GRCh38
4
hg19
Lab
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
month_released!
March, 2020
award.project!
AMP
BIOSAMPLE
ASSAY
396 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
ChIP-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
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tissue
kidney
47
lung
9
10
cell line
EndoC-BH1
1
1
EndoC_BH1
1
stem cell
SB Ad3.1
1
1
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