Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
100
single cell RNA-seq
78
ATAC-seq
54
total RNA-seq
29
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
156
Transcription
130
DNA binding
108
DNA accessibility
4
3D chromatin structure
Target of assay
116
histone
116
histone modification
62
narrow histone mark
54
broad histone mark
10
RNA binding protein
10
transcription factor
7
control
1
chromatin remodeller
Date released
72
September, 2018
48
July, 2018
47
June, 2019
46
August, 2017
45
May, 2020
43
April, 2018
23
October, 2019
22
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
May, 2021
Available data
429
bam
409
fastq
398
bigWig
181
bed narrowPeak
174
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
hdf5
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
tar
Organism
398
Homo sapiens
Biosample type
1761
tissue
515
cell line
398
primary cell
252
in vitro differentiated cells
3
stem cell
Organ
231
epithelium
192
pancreas
32
connective tissue
29
vasculature
28
kidney
24
blood vessel
20
brain
15
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
388
AMP
10
HPAP
Genome assembly (visualization)
381
hg19
339
GRCh38
Lab
388
AMP-T2D consortium
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
month_released!
March, 2020
BIOSAMPLE
ASSAY
398 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
pancreatic alpha cell
7
12
13
10
pancreatic beta cell
7
12
10
10
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
5
4
pancreatic endocrine cell
23
+ See 73 more…
See all biosamples
Download