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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
17
WGBS
3
ChIP-seq
1
FAIRE-seq
Assay category
36
DNA methylation
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
23
July, 2019
7
November, 2018
6
August, 2017
3
November, 2017
1
October, 2019
Available data
3172
bam
2929
bigWig
1682
bed narrowPeak
1459
tsv
1334
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
271
bed bed3+
155
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
13
hic
12
bed bed3
11
bedpe bed3+
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
40
Homo sapiens
Biosample type
25
tissue
11
primary cell
4
cell line
Organ
8
heart
7
epithelium
6
liver
6
pancreas
4
kidney
4
musculature of body
3
connective tissue
3
vasculature
2
adipose tissue
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
1
vein
Project
40
AMP
Genome assembly (visualization)
23
hg19
17
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
month_released!
March, 2020
BIOSAMPLE
ASSAY
40 results
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Clear Filters
RRBS
WGBS
ChIP-seq
FAIRE-seq
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
+ See 6 more…
cell line
HepG2
1
3
See all biosamples
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