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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
total RNA-seq
29
ATAC-seq
11
ChIP-seq
3
single cell RNA-seq
1
DNAme array
1
pCHi-C
Assay category
126
Transcription
29
DNA accessibility
11
DNA binding
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
narrow histone mark
4
transcription factor
2
broad histone mark
1
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
218
June, 2019
182
February, 2023
176
May, 2022
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
145
bam
131
bigWig
125
tsv
19
bed narrowPeak
6
tagAlign
4
fastq
1
bedpe bed3+
Organism
168
Homo sapiens
Biosample type
86
in vitro differentiated cells
38
tissue
23
primary cell
21
cell line
Organ
63
pancreas
29
epithelium
3
heart
2
connective tissue
2
embryo
1
adipose tissue
Project
167
AMP
1
T1D
Genome assembly (visualization)
144
GRCh38
144
hg19
Lab
Kyle Gaulton, UCSD
168
AMP-T2D consortium
Audit category:
89
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
168 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNAme array
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
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tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
primary cell
monocyte
1
13
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
pancreatic alpha cell
2
embryonic stem cell
1
neutrophil
1
+ See 1 more…
cell line
EndoC_BH1
4
16
1
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