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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
125
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
139
DNA binding
127
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
80
histone
80
histone modification
42
broad histone mark
37
narrow histone mark
34
transcription factor
25
control
6
RNA binding protein
3
chromatin remodeller
Date released
83
May, 2021
68
August, 2017
42
August, 2021
30
December, 2017
26
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
263
bam
233
bigWig
125
tsv
118
bed narrowPeak
114
fastq
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
318
Homo sapiens
Biosample type
2685
tissue
849
primary cell
649
cell line
318
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
318
AMP
Genome assembly (visualization)
271
hg19
244
GRCh38
3
hg18
Lab
311
AMP-T2D consortium
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
organ_slims!
embryo
BIOSAMPLE
ASSAY
318 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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