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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
51
ChIP-seq
45
ATAC-seq
2
Hi-C
2
single cell RNA-seq
1
FAIRE-seq
Assay category
58
Transcription
51
DNA binding
46
DNA accessibility
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
23
broad histone mark
12
narrow histone mark
11
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
43
October, 2019
35
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
1
March, 2020
Available data
122
bam
100
bigWig
87
bed narrowPeak
58
tsv
38
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
bed bed3+
6
tagAlign
2
hic
1
bedpe bed3+
1
tar
Organism
157
Homo sapiens
Biosample type
69
tissue
66
cell line
22
primary cell
Organ
866
pancreas
778
liver
656
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
158
bone element
137
artery
86
limb
62
musculature of body
61
blood
61
bodily fluid
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
157
AMP
Genome assembly (visualization)
134
GRCh38
104
hg19
Lab
157
AMP-T2D consortium
Audit category:
1
audit script error
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
coronary artery
1
5
36
tibial artery
1
23
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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