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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
36
DNase-seq
21
total RNA-seq
8
ATAC-seq
4
Hi-C
1
GRO-seq
1
WGBS
Assay category
88
DNA binding
44
DNA accessibility
21
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
61
histone
61
histone modification
38
broad histone mark
24
control
23
narrow histone mark
3
transcription factor
Date released
69
October, 2019
32
June, 2019
13
December, 2017
13
February, 2018
8
August, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
2
May, 2021
1
January, 2018
Available data
150
bam
120
bigWig
106
bed narrowPeak
84
bigBed narrowPeak
39
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
27
fastq
21
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
159
Homo sapiens
Biosample type
122
tissue
29
in vitro differentiated cells
8
cell line
Organ
895
pancreas
791
liver
683
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
159
AMP
Genome assembly (visualization)
125
GRCh38
125
hg19
1
hg18
Lab
159
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
organ_slims!
large intestine
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
GRO-seq
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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