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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
Assay category
11
DNA binding
Target of assay
457
histone modification
456
histone
335
control
290
narrow histone mark
165
broad histone mark
92
transcription factor
11
RNA binding protein
8
recombinant protein
5
nucleotide modification
2
chromatin remodeller
Date released
6
August, 2017
2
November, 2017
1
April, 2019
1
August, 2021
1
November, 2019
Available data
103
bam
101
bigWig
100
bed narrowPeak
bigBed narrowPeak
89
fastq
9
bed broadPeak
9
bigBed broadPeak
2
bed bed3+
1
tar
Organism
11
Homo sapiens
Biosample type
4
cell line
4
in vitro differentiated cells
3
tissue
Organ
4
connective tissue
3
liver
3
pancreas
1
epithelium
1
kidney
Project
11
AMP
Genome assembly (visualization)
8
hg19
7
GRCh38
Lab
10
AMP-T2D consortium
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
cell line
HepG2
3
EndoC_BH1
1
in vitro differentiated cells
adipocyte
4
tissue
islet of Langerhans
2
kidney
1
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