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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
snATAC-seq
28
ChIP-seq
7
single cell RNA-seq
4
Hi-C
2
RNA microarray
Assay category
28
DNA binding
7
Transcription
4
3D chromatin structure
Target of assay
28
transcription factor
3
chromatin remodeller
Date released
27
December, 2017
5
February, 2021
4
December, 2019
3
October, 2022
1
December, 2018
1
October, 2019
Available data
28
bam
28
bed narrowPeak
28
bigBed narrowPeak
28
bigWig
28
fastq
9
tsv
5
csv
5
txt
4
hic
3
bedpe bed3+
3
cool
Organism
41
Homo sapiens
Biosample type
34
tissue
4
primary cell
2
in vitro differentiated cells
1
cell line
Organ
27
liver
7
kidney
5
epithelium
3
pancreas
1
blood
1
blood vessel
1
bodily fluid
1
vasculature
1
vein
Project
38
AMP
3
HPAP
Genome assembly (visualization)
32
hg19
28
GRCh38
Lab
38
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
353
inconsistent ontology term
28
inconsistent control
13
audit script error
1
inconsistent replicate
lab.title!
Maike Sander, UCSD
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
41 results
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Clear Filters
ChIP-seq
single cell RNA-seq
Hi-C
RNA microarray
tissue
liver
27
kidney
5
kidney interstitium
1
renal glomerulus
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
GM12878
1
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