Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
295
ChIP-seq
Assay category
295
DNA binding
Target of assay
223
histone
223
histone modification
127
narrow histone mark
96
broad histone mark
66
control
6
transcription factor
Date released
78
November, 2017
73
August, 2017
50
May, 2020
49
October, 2019
20
August, 2021
14
October, 2017
8
February, 2021
3
May, 2021
Available data
2616
bam
2402
bigWig
1484
bed narrowPeak
1197
tsv
945
fastq
932
bigBed narrowPeak
295
tagAlign
272
bed broadPeak
235
bigBed broadPeak
233
bed bed3+
76
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
12
bedpe bed3+
12
hic
11
bed bed3
6
bed bedgraph
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
288
Homo sapiens
Biosample type
238
tissue
primary cell
37
in vitro differentiated cells
20
cell line
Organ
118
brain
82
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
1
pituitary gland
Project
295
AMP
Genome assembly (visualization)
145
GRCh38
136
hg19
Lab
295
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
lab.title!
Maike Sander, UCSD
biosample_type!
primary cell
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
295 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
pancreatic PP cell
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
See all biosamples
Download