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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
single cell RNA-seq
47
WGBS
31
DNase-seq
29
snATAC-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
261
DNA accessibility
249
Transcription
58
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
55
June, 2019
33
October, 2019
28
July, 2019
19
September, 2020
9
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
Available data
513
bigWig
509
bam
295
bed narrowPeak
254
fastq
170
tsv
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
870
Homo sapiens
Biosample type
2598
tissue
870
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
332
epithelium
269
pancreas
36
kidney
36
vasculature
35
connective tissue
30
blood vessel
21
vein
18
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
456
AMP
209
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
524
hg19
436
GRCh38
Lab
421
AMP-T2D consortium
239
Kyle Gaulton, UCSD
209
Klaus Kaestner, Upenn
1
ITG
Audit category:
47
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Maike Sander, UCSD
assay_title!
single cell RNA-seq
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
870 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
pancreatic beta cell
13
21
23
16
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
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