Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
222
ChIP-seq
single cell RNA-seq
178
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
249
Transcription
236
DNA accessibility
222
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
190
histone
190
histone modification
101
broad histone mark
89
narrow histone mark
32
control
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
58
September, 2018
40
August, 2017
36
February, 2021
28
July, 2019
21
October, 2019
19
September, 2020
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
Available data
513
bigWig
509
bam
295
bed narrowPeak
281
fastq
170
tsv
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
792
Homo sapiens
Biosample type
2041
tissue
792
primary cell
375
in vitro differentiated cells
307
cell line
10
stem cell
Organ
275
epithelium
250
pancreas
20
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
9
vein
8
blood
8
bodily fluid
7
brain
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
348
AMP
239
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
426
hg19
331
GRCh38
Lab
313
AMP-T2D consortium
239
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
24
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
lab.title!
Maike Sander, UCSD
assay_title!
single cell RNA-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
792 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
29
31
1
pancreatic beta cell
21
13
16
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 75 more…
See all biosamples
Download