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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
166
total RNA-seq
129
ATAC-seq
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
217
DNA accessibility
209
DNA binding
168
Transcription
11
DNA methylation
7
3D chromatin structure
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
20
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
51
February, 2023
34
October, 2019
30
February, 2021
28
July, 2019
21
May, 2022
18
August, 2017
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
1
March, 2020
1
March, 2023
Available data
395
bigWig
389
bam
227
bed narrowPeak
136
tsv
100
tagAlign
92
fastq
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
21
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
629
Homo sapiens
Biosample type
2058
tissue
629
primary cell
570
cell line
389
in vitro differentiated cells
10
stem cell
Organ
336
epithelium
pancreas
37
vasculature
36
kidney
35
connective tissue
31
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
337
AMP
204
T1D
87
HPAP
1
ITG
Genome assembly (visualization)
417
hg19
318
GRCh38
Lab
302
AMP-T2D consortium
239
Kyle Gaulton, UCSD
87
Klaus Kaestner, Upenn
1
ITG
Audit category:
47
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
lab.title!
Maike Sander, UCSD
assay_title!
single cell RNA-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
629 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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