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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
164
total RNA-seq
127
ATAC-seq
single cell RNA-seq
56
snATAC-seq
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
210
DNA accessibility
185
DNA binding
166
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
158
histone
158
histone modification
83
broad histone mark
75
narrow histone mark
17
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
51
February, 2023
October, 2019
30
February, 2021
28
July, 2019
21
May, 2022
18
August, 2017
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
1
March, 2020
1
March, 2023
Available data
372
bigWig
358
bam
206
bed narrowPeak
134
tsv
100
tagAlign
92
fastq
74
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
21
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
Organism
595
Homo sapiens
Biosample type
1859
tissue
595
primary cell
555
cell line
381
in vitro differentiated cells
10
stem cell
Organ
303
epithelium
pancreas
35
connective tissue
25
kidney
18
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
303
AMP
204
T1D
87
HPAP
1
ITG
Genome assembly (visualization)
391
hg19
296
GRCh38
Lab
268
AMP-T2D consortium
239
Kyle Gaulton, UCSD
87
Klaus Kaestner, Upenn
1
ITG
Audit category:
45
inconsistent ontology term
27
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
lab.title!
Maike Sander, UCSD
assay_title!
single cell RNA-seq
organ_slims!
pancreas
month_released!
October, 2019
BIOSAMPLE
ASSAY
595 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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