Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
single cell RNA-seq
187
total RNA-seq
186
ATAC-seq
154
ChIP-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
9
Hi-C
9
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
376
Transcription
272
DNA accessibility
154
DNA binding
56
DNA methylation
9
3D chromatin structure
Target of assay
116
histone
116
histone modification
61
narrow histone mark
55
broad histone mark
31
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
53
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
448
bam
431
bigWig
409
fastq
213
tsv
162
bed narrowPeak
153
zippedFastqFolder
107
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
29
bed bed3+
12
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
868
Homo sapiens
Biosample type
2375
tissue
868
primary cell
247
in vitro differentiated cells
240
cell line
10
stem cell
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
490
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
431
hg19
376
GRCh38
Lab
490
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Maike Sander, UCSD
month_released!
May, 2021
organ_slims!
liver
BIOSAMPLE
ASSAY
868 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
12
52
35
13
31
1
Langerhans cell
85
48
pancreatic beta cell
12
21
23
13
16
1
exocrine cell
39
pancreatic acinar cell
12
4
9
8
1
+ See 82 more…
See all biosamples
Download