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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ChIP-seq
153
total RNA-seq
151
ATAC-seq
102
single cell RNA-seq
27
DNase-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
259
DNA binding
257
Transcription
186
DNA accessibility
11
DNA methylation
3
3D chromatin structure
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
73
September, 2018
59
August, 2017
53
June, 2019
48
July, 2018
43
April, 2018
27
July, 2019
13
October, 2019
12
February, 2023
8
January, 2021
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2023
1
November, 2018
Available data
582
bam
579
bigWig
278
bed narrowPeak
262
tsv
237
fastq
100
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
733
Homo sapiens
Biosample type
2643
tissue
733
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
254
epithelium
194
pancreas
39
connective tissue
37
vasculature
36
kidney
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
528
AMP
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
600
hg19
508
GRCh38
Lab
493
AMP-T2D consortium
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Maike Sander, UCSD
organ_slims!
blood vessel
award.project!
HPAP
BIOSAMPLE
ASSAY
733 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic beta cell
13
10
7
12
pancreatic alpha cell
13
10
6
12
CD8-positive, alpha-beta T cell
33
4
2
1
pancreatic ductal cell
13
4
4
10
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