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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
DNase-seq
4
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
1
ChIP-seq
1
Hi-C
1
small RNA-seq
Assay category
15
Transcription
7
DNA accessibility
1
3D chromatin structure
1
DNA binding
Target of assay
1
control
Date released
7
July, 2019
6
November, 2020
5
June, 2019
3
February, 2021
2
April, 2018
2
July, 2018
1
May, 2021
Available data
24
bam
22
bigWig
15
tsv
7
bed bed3+
7
bed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
5
bigBed narrowPeak
3
fastq
1
bed bed3
1
hdf5
Organism
26
Homo sapiens
Biosample type
546
tissue
93
in vitro differentiated cells
26
primary cell
Organ
396
epithelium
341
pancreas
36
vasculature
31
blood vessel
28
kidney
26
connective tissue
22
vein
21
brain
13
liver
8
blood
8
bodily fluid
7
heart
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
25
AMP
1
T1D
Genome assembly (visualization)
23
hg19
22
GRCh38
Lab
25
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
lab.title!
Maike Sander, UCSD
organ_slims!
musculature of body
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
26 results
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total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
pCHi-C
ChIP-seq
Hi-C
small RNA-seq
primary cell
osteoblast
5
1
2
1
pancreatic stellate cell
4
cardiac fibroblast
2
1
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
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