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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
258
ATAC-seq
178
DNase-seq
106
total RNA-seq
85
RNA microarray
single cell RNA-seq
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
907
DNA binding
468
DNA accessibility
106
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
195
August, 2017
163
June, 2019
122
August, 2021
115
May, 2019
92
February, 2021
90
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2022
50
May, 2020
48
December, 2017
40
May, 2024
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
12
March, 2020
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
4
July, 2018
4
March, 2019
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
Available data
1901
bam
1766
bigWig
984
bed narrowPeak
tsv
561
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1620
Homo sapiens
Biosample type
1629
tissue
731
primary cell
543
cell line
263
in vitro differentiated cells
6
stem cell
Organ
242
brain
229
pancreas
228
kidney
206
liver
201
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
74
musculature of body
69
artery
51
eye
38
nerve
24
spleen
18
ureter
16
skeleton
12
epithelium
10
lung
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1588
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
942
GRCh38
837
hg19
Lab
1346
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Maike Sander, UCSD
files.file_type!
tsv
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
1629 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
liver
145
20
2
20
3
1
1
islet of Langerhans
71
66
1
31
7
3
1
4
1
4
kidney
27
75
13
49
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
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