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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
53
ATAC-seq
40
ChIP-seq
33
total RNA-seq
20
snATAC-seq
4
MeRIP-seq
2
Hi-C
1
pCHi-C
Assay category
89
Transcription
73
DNA accessibility
40
DNA binding
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
2
nucleotide modification
Date released
64
May, 2022
47
September, 2023
40
May, 2024
19
April, 2020
18
February, 2023
8
January, 2021
4
March, 2019
4
November, 2020
2
August, 2021
2
May, 2021
1
October, 2017
Available data
78
bed narrowPeak
61
bigWig
26
fastq
25
bam
6
txt
2
bed broadPeak
1
bedpe
1
bedpe bed3+
1
hic
1
tsv
Organism
208
Homo sapiens
Biosample type
564
primary cell
209
tissue
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
62
pancreas
47
kidney
40
heart
40
liver
19
lung
1
thymus
Project
116
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
43
GRCh38
42
hg19
Lab
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
Maike Sander, UCSD
1
Stephen Parker, UMich
lab.title!
Maike Sander, UCSD
Katalin Susztak, Upenn
AMP-T2D consortium
BIOSAMPLE
ASSAY
209 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
33
12
6
4
2
kidney
47
left cardiac atrium
40
liver
20
20
lung
9
10
pancreas
1
4
thymus
1
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