Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
ChIP-seq
237
total RNA-seq
188
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
DNase-seq
16
pCHi-C
10
Hi-C
6
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
419
Transcription
262
DNA accessibility
245
DNA binding
54
DNA methylation
10
3D chromatin structure
Target of assay
212
histone
212
histone modification
109
broad histone mark
103
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
43
April, 2018
42
July, 2018
23
July, 2019
21
June, 2019
21
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
552
bigWig
540
bam
402
fastq
253
bed narrowPeak
247
tsv
153
zippedFastqFolder
100
tagAlign
75
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
25
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1006
Homo sapiens
Biosample type
2386
tissue
1006
primary cell
566
cell line
279
in vitro differentiated cells
9
stem cell
Organ
396
epithelium
341
pancreas
36
vasculature
31
blood vessel
kidney
26
connective tissue
22
vein
21
brain
13
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
482
AMP
324
HPAP
199
T1D
1
ITG
Genome assembly (visualization)
567
hg19
477
GRCh38
Lab
447
AMP-T2D consortium
324
Klaus Kaestner, Upenn
234
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Maike Sander, UCSD
organ_slims!
kidney
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
1006 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 75 more…
See all biosamples
Download