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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
73
ChIP-seq
20
DNase-seq
6
ATAC-seq
6
WGBS
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
399
Transcription
73
DNA binding
26
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
19
June, 2019
10
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
458
bam
441
bigWig
399
tsv
43
fastq
31
bed narrowPeak
28
bigBed narrowPeak
24
bed bed3+
21
bed broadPeak
20
bigBed broadPeak
8
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
505
Homo sapiens
Biosample type
506
tissue
2
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
504
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
506
AMP
Genome assembly (visualization)
442
hg19
440
GRCh38
Lab
506
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
506 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
2
1
1
white adipose tissue
12
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