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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
72
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
72
DNA binding
6
DNA methylation
5
DNA accessibility
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
17
transcription factor
11
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
October, 2019
Available data
442
bam
424
bigWig
401
tsv
44
fastq
13
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
486
Homo sapiens
Biosample type
484
tissue
2
primary cell
1
in vitro differentiated cells
Organ
907
pancreas
721
liver
670
connective tissue
487
adipose tissue
471
epithelium
355
heart
246
kidney
178
vasculature
176
blood vessel
159
bone element
153
brain
113
artery
69
blood
69
bodily fluid
50
musculature of body
37
embryo
36
eye
24
spleen
21
limb
20
lung
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
487
AMP
Genome assembly (visualization)
422
GRCh38
422
hg19
Lab
487
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
lab.title!
Maike Sander, UCSD
files.file_type!
bed broadPeak
month_released!
October, 2019
BIOSAMPLE
ASSAY
487 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
2
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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