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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
41
ChIP-seq
32
ATAC-seq
5
DNase-seq
5
pCHi-C
3
WGBS
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
41
DNA binding
37
DNA accessibility
4
DNA methylation
Target of assay
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
386
February, 2021
39
August, 2017
32
February, 2023
22
October, 2019
13
July, 2019
8
June, 2019
3
February, 2020
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
Available data
449
bam
431
bigWig
406
tsv
46
bed narrowPeak
fastq
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
507
Homo sapiens
Biosample type
501
tissue
7
primary cell
Organ
583
connective tissue
474
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
508
AMP
Genome assembly (visualization)
439
hg19
407
GRCh38
Lab
508
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Maike Sander, UCSD
files.file_type!
fastq
BIOSAMPLE
ASSAY
508 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
WGBS
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
14
2
1
4
retina
3
15
3
pigmented layer of retina
2
12
+ See 4 more…
primary cell
retinal pigment epithelial cell
3
1
1
mesenchymal stem cell of adipose
1
1
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